Package VCF.Changers

Class StandardizeCountsFormatChanger

  • All Implemented Interfaces:
    PositionChanger

    public class StandardizeCountsFormatChanger
    extends java.lang.Object
    implements PositionChanger
    Changes readcounts included in two formats to the new single format (AD) specification
    • Method Summary

      All Methods Instance Methods Concrete Methods 
      Modifier and Type Method Description
      void change​(Position p)
      Change the given genotype
      • Methods inherited from class java.lang.Object

        equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
    • Constructor Detail

      • StandardizeCountsFormatChanger

        public StandardizeCountsFormatChanger​(java.lang.String ref,
                                              java.lang.String alt)
        Constructor
        Parameters:
        ref - Format containing the reference allele read count
        alt - Format containing the alternate allele read count