Package Accuracy

Class DepthMaskFactory


  • public class DepthMaskFactory
    extends java.lang.Object
    Utility class for easily creating multiple DepthMasks with the same parameters
    • Constructor Summary

      Constructors 
      Constructor Description
      DepthMaskFactory​(int number, int minDepth, int limitDist, DepthMask.Method method)
      Default constructor
      DepthMaskFactory​(org.apache.commons.configuration2.HierarchicalConfiguration<org.apache.commons.configuration2.tree.ImmutableNode> params)
      Creates the factory from the given configuration
    • Constructor Detail

      • DepthMaskFactory

        public DepthMaskFactory​(int number,
                                int minDepth,
                                int limitDist,
                                DepthMask.Method method)
        Default constructor
        Parameters:
        number - The number of genotypes to makes reads from
        minDepth - Only mask genotypes with a greater read depth than this
        limitDist - The distribution to mask the reads to
        method - The method to be used to select genotypes to be masked
      • DepthMaskFactory

        public DepthMaskFactory​(org.apache.commons.configuration2.HierarchicalConfiguration<org.apache.commons.configuration2.tree.ImmutableNode> params)
        Creates the factory from the given configuration
        Parameters:
        params - The configuration