Package Files.VCFData
Class Position
- java.lang.Object
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- Files.VCFData.Position
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public class Position extends java.lang.Object
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Constructor Summary
Constructors Constructor Description Position(java.lang.String[] parts, java.util.Set<InfoDefinition> infodef, java.util.Set<FormatDefinition> formatdef)
Position(java.lang.String chrom, java.lang.String position, java.lang.String id, java.lang.String ref, java.lang.String[] alt, java.lang.String qual, java.lang.String filter, java.util.Map<InfoDefinition,java.lang.String> info, java.util.List<FormatDefinition> format)
Position(java.lang.String s, java.util.Set<InfoDefinition> infodef, java.util.Set<FormatDefinition> formatdef)
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Method Summary
All Methods Instance Methods Concrete Methods Modifier and Type Method Description void
addFormat(FormatDefinition fd)
Position
clone()
boolean
equals(java.lang.Object o)
java.lang.String
getChrom()
java.util.List<FormatDefinition>
getFormat()
java.lang.String
getPosition()
int
hashCode()
void
removeFormat(FormatDefinition fd)
void
removeInfo(InfoDefinition id)
void
stripFormats()
java.lang.String
toString()
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Constructor Detail
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Position
public Position(java.lang.String s, java.util.Set<InfoDefinition> infodef, java.util.Set<FormatDefinition> formatdef)
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Position
public Position(java.lang.String[] parts, java.util.Set<InfoDefinition> infodef, java.util.Set<FormatDefinition> formatdef)
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Position
public Position(java.lang.String chrom, java.lang.String position, java.lang.String id, java.lang.String ref, java.lang.String[] alt, java.lang.String qual, java.lang.String filter, java.util.Map<InfoDefinition,java.lang.String> info, java.util.List<FormatDefinition> format)
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Method Detail
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getFormat
public java.util.List<FormatDefinition> getFormat()
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getChrom
public java.lang.String getChrom()
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removeInfo
public void removeInfo(InfoDefinition id)
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getPosition
public java.lang.String getPosition()
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addFormat
public void addFormat(FormatDefinition fd)
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removeFormat
public void removeFormat(FormatDefinition fd)
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toString
public java.lang.String toString()
- Overrides:
toString
in classjava.lang.Object
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stripFormats
public void stripFormats()
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clone
public Position clone()
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equals
public boolean equals(java.lang.Object o)
- Overrides:
equals
in classjava.lang.Object
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hashCode
public int hashCode()
- Overrides:
hashCode
in classjava.lang.Object
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