Package Files
Class VCF
- java.lang.Object
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- Files.VCF
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public class VCF extends java.lang.Object
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Method Summary
All Methods Static Methods Instance Methods Concrete Methods Modifier and Type Method Description VCF
clone()
static VCF
fromDoubleArray(double[][] values, java.util.List<Position> positions, java.util.List<java.lang.String> samples, java.lang.String id, java.lang.String description)
Data
getData()
Meta
getMeta()
void
removeFormat(FormatDefinition fd)
void
removeFormat(java.lang.String s)
void
removeInfo(InfoDefinition id)
void
removeInfo(java.lang.String s)
void
stripInfo()
void
writeFile(java.io.File f)
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Method Detail
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writeFile
public void writeFile(java.io.File f) throws java.io.FileNotFoundException, java.io.IOException
- Throws:
java.io.FileNotFoundException
java.io.IOException
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getMeta
public Meta getMeta()
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getData
public Data getData()
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stripInfo
public void stripInfo()
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removeInfo
public void removeInfo(java.lang.String s)
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removeInfo
public void removeInfo(InfoDefinition id)
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removeFormat
public void removeFormat(java.lang.String s)
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removeFormat
public void removeFormat(FormatDefinition fd)
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clone
public VCF clone()
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