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- accuracy(byte[][], byte[][]) - Method in class Mask.Mask
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Calculates imputation accuracy
- add(E, V) - Method in class Utils.TopQueue
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Attempts to add a new entry
- add(String, String) - Method in class Files.VCFData.Data
- addFormat(FormatDefinition) - Method in class Files.VCFData.Position
- addFormat(FormatDefinition, Position, String[]) - Method in class Files.VCFData.Data
- addFormatDefinition(FormatDefinition) - Method in class Files.VCFData.Meta
- addPosition(Position, String[]) - Method in class Files.VCFData.Data
- addPosition(String, Set<InfoDefinition>, Set<FormatDefinition>) - Method in class Files.VCFData.Data
- asArray() - Method in class Files.PlinkNumeric
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Get the genotypes as an array.
- asArray() - Method in class Files.PlinkPed
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Get the genotypes as an array.
- asArray(FormatDefinition, Mapper<V>) - Method in class Files.VCFData.Data
- asArrayTransposed() - Method in class Files.PlinkNumeric
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Get the genotypes as an array.
- asArrayTransposed() - Method in class Files.PlinkPed
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Get the genotypes as an array.
- asArrayTransposed(FormatDefinition, Mapper<V>) - Method in class Files.VCFData.Data
- asByteArray(FormatDefinition, ByteMapper) - Method in class Files.VCFData.Data
- asByteArrayTransposed(FormatDefinition, ByteMapper) - Method in class Files.VCFData.Data
- asDoubleArray(FormatDefinition, DoubleMapper) - Method in class Files.VCFData.Data
- asDoubleArrayTransposed(FormatDefinition, DoubleMapper) - Method in class Files.VCFData.Data
- asIntArray(FormatDefinition, IntegerMapper) - Method in class Files.VCFData.Data
- asIntArrayTransposed(FormatDefinition, IntegerMapper) - Method in class Files.VCFData.Data
- asStringArray(FormatDefinition) - Method in class Files.VCFData.Data
- asStringArray(FormatDefinition, StringMapper) - Method in class Files.VCFData.Data
- asStringArrayTransposed(FormatDefinition) - Method in class Files.VCFData.Data
- asStringArrayTransposed(FormatDefinition, StringMapper) - Method in class Files.VCFData.Data
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