Correlation |
Provides classes for calculating LD using different methods.
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Exceptions |
Provides various exceptions
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Executable |
Provides the LinkImpute main class
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Files |
Provides class for dealing with data files.
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Files.VCFData |
Provides classes for dealing with VCF files.
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Files.VCFMappers |
Provides classes that help convert string vcf data to other data types.
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Mask |
Provides classes for masking genotypes for testing imputation accuracy.
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Methods |
Provides the actual imputation classes.
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Similarity |
Provides classes for calculating similarity (based on LD) between SNPs.
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Utils |
Provides various utility classes.
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