A B C D E F G H I K L M N O P R S T U V W 
All Classes All Packages

P

Pearson - Class in Correlation
Calculates LD as a simple Pearson correlation
Pearson() - Constructor for class Correlation.Pearson
 
Phred - Class in Files.VCFData
 
Phred() - Constructor for class Files.VCFData.Phred
 
PlinkNumeric - Class in Files
Class for dealing with data in the plink .raw format.
PlinkNumeric(File) - Constructor for class Files.PlinkNumeric
Constructor.
PlinkNumeric(File, boolean) - Constructor for class Files.PlinkNumeric
Constructor.
PlinkNumeric(File, int) - Constructor for class Files.PlinkNumeric
Constructor.
PlinkNumeric(File, int, boolean) - Constructor for class Files.PlinkNumeric
Constructor.
PlinkPed - Class in Files
Class for dealing with data in the plink .ped format.
PlinkPed(File) - Constructor for class Files.PlinkPed
Constructor.
PlinkPed(File, int) - Constructor for class Files.PlinkPed
Constructor.
Position - Class in Files.VCFData
 
Position(String[], Set<InfoDefinition>, Set<FormatDefinition>) - Constructor for class Files.VCFData.Position
 
Position(String, String, String, String, String[], String, String, Map<InfoDefinition, String>, List<FormatDefinition>) - Constructor for class Files.VCFData.Position
 
Position(String, Set<InfoDefinition>, Set<FormatDefinition>) - Constructor for class Files.VCFData.Position
 
Progress - Interface in Utils
Interface for classes that show some sort of progress to standard out
A B C D E F G H I K L M N O P R S T U V W 
All Classes All Packages