Hierarchy For All Packages
Package Hierarchies:Class Hierarchy
- java.lang.Object
- Similarity.CalculatedSimilar (implements Similarity.Similar)
- Correlation.Correlation
- Files.VCFData.Data
- Files.VCFData.FilterDefinition<D>
- Files.VCFData.FormatDefinition<D>
- Files.VCFData.InfoDefinition
- Methods.Knni
- Methods.KnniLD
- Methods.KnniLDOpt (implements Utils.Value)
- Methods.KnniOpt (implements Utils.Value)
- Executable.LinkImpute
- Mask.Mask
- Files.VCFData.Meta
- Methods.Mode
- Utils.Optimize
- Files.VCFData.Phred
- Files.PlinkNumeric
- Files.PlinkPed
- Files.VCFData.Position
- Mask.SampleSnp (implements java.lang.Comparable<T>)
- Utils.SilentProgress (implements Utils.Progress)
- Utils.SortByIndexDouble (implements java.util.Comparator<T>)
- Similarity.StoredSimilar (implements Similarity.Similar)
- Utils.TextProgress (implements Utils.Progress)
- java.lang.Throwable (implements java.io.Serializable)
- java.lang.Exception
- Exceptions.DataException
- Exceptions.InvalidGenotypeException
- Exceptions.RepeatedSampleException
- Exceptions.RepeatedSNPException
- Exceptions.WrongNumberOfSNPsException
- Exceptions.NotEnoughGenotypesException
- Utils.Optimize.OptimizeException
- Exceptions.DataException
- java.lang.Exception
- Utils.TopQueue<E,V>
- Files.VCF
Interface Hierarchy
- Files.VCFMappers.ByteMapper
- Files.VCFMappers.DoubleMapper
- Files.VCFMappers.IntegerMapper<M>
- Files.VCFMappers.Mapper<M>
- Utils.Progress
- Similarity.Similar
- Files.VCFMappers.StringMapper
- Utils.Value
Enum Hierarchy
- java.lang.Object
- java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
- Files.VCFData.DataType
- java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)