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fastAccuracy(byte[][], Mask) - Method in class Methods.Knni
Performs a fast accuracy calculation - only imputes those genotypes that were masked rather than all missing genotypes.
fastAccuracy(byte[][], Mask) - Method in class Methods.KnniLD
Performs a fast accuracy calculation - only imputes those genotypes that were masked rather than all missing genotypes.
fastAccuracy(byte[][], Mask) - Method in class Methods.Mode
Performs a fast accuracy calculation - only imputes those genotypes that were masked rather than all missing genotypes.
fastAccuracy(byte[][], Mask, double[][]) - Method in class Methods.Knni
Performs a fast accuracy calculation - only imputes those genotypes that were masked rather than all missing genotypes.
Files - package Files
Provides class for dealing with data files.
Files.VCFData - package Files.VCFData
Provides classes for dealing with VCF files.
Files.VCFMappers - package Files.VCFMappers
Provides classes that help convert string vcf data to other data types.
FilterDefinition<D> - Class in Files.VCFData
 
FilterDefinition(String) - Constructor for class Files.VCFData.FilterDefinition
 
FilterDefinition(String, String) - Constructor for class Files.VCFData.FilterDefinition
 
FLAG - Files.VCFData.DataType
 
FLOAT - Files.VCFData.DataType
 
FormatDefinition<D> - Class in Files.VCFData
 
FormatDefinition(String) - Constructor for class Files.VCFData.FormatDefinition
 
FormatDefinition(String, DataType, String, String, String, String) - Constructor for class Files.VCFData.FormatDefinition
 
fromDoubleArray(double[][], List<Position>, List<String>, String, String) - Static method in class Files.VCF
 
fromPhred(double) - Static method in class Files.VCFData.Phred
 
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